SMTL ID : 5fcd.3 (2 other biounits)

Crystal structure of MccD protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

3 x UNK- UNK- UNK- MSE- UNK: UNK-UNK-UNK-MSE-UNK(Non-covalent)

UNK-UNK-UNK-MSE-UNK.1: 8 residues within 4Å: Chain A: P.33, G.34, Y.37, H.203, M.205, R.254, V.259, L.261 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.37 Hydrogen bonds: A:G.34, A:R.254, A:R.254 UNK-UNK-UNK-MSE-UNK.4: 8 residues within 4Å: Chain C: P.33, G.34, Y.37, H.203, M.205, R.254, V.259, L.261 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:Y.37 Hydrogen bonds: C:G.34, C:R.254, C:R.254 UNK-UNK-UNK-MSE-UNK.7: 8 residues within 4Å: Chain E: P.33, G.34, Y.37, H.203, M.205, R.254, V.259, L.261 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:Y.37 Hydrogen bonds: E:G.34, E:R.254, E:R.254

3 x UNK- UNK- UNK- UNK- MSE- UNK: UNK-UNK-UNK-UNK-MSE-UNK(Non-covalent)

UNK-UNK-UNK-UNK-MSE-UNK.2: 10 residues within 4Å: Chain B: P.33, G.34, Y.37, F.156, H.203, M.205, L.250, R.254, V.259, L.261 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.156 Hydrogen bonds: B:G.34, B:R.254 UNK-UNK-UNK-UNK-MSE-UNK.5: 10 residues within 4Å: Chain D: P.33, G.34, Y.37, F.156, H.203, M.205, L.250, R.254, V.259, L.261 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:F.156 Hydrogen bonds: D:G.34, D:R.254 UNK-UNK-UNK-UNK-MSE-UNK.8: 10 residues within 4Å: Chain F: P.33, G.34, Y.37, F.156, H.203, M.205, L.250, R.254, V.259, L.261 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:F.156 Hydrogen bonds: F:G.34, F:R.254

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 8 residues within 4Å: Chain A: N.133, R.134, L.135, I.136 Chain B: N.133, R.134, L.135, I.136 Ligand excluded by PLIP CL.6: 8 residues within 4Å: Chain C: N.133, R.134, L.135, I.136 Chain D: N.133, R.134, L.135, I.136 Ligand excluded by PLIP CL.9: 8 residues within 4Å: Chain E: N.133, R.134, L.135, I.136 Chain F: N.133, R.134, L.135, I.136 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nocek, B. et al., Crystal structure of MccD protein. To Be Published

Release Date

2015-12-30

Peptides

MccD: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

MccD

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