SMTL ID : 5fdd.1

Endonuclease inhibitor 1 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

1 x 4P8: 5-(2-chlorobenzyl)-2-hydroxy-3-nitrobenzaldehyde(Non-covalent)

4P8.1: 10 residues within 4Å: Chain A: Y.29, A.42, H.46, E.65, E.104, I.105, G.106, Y.115, K.119 Ligands: MN.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.29 Hydrogen bonds: A:Y.115, A:Y.115 pi-Stacking: A:H.46

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: E.65, L.91, D.93 Ligands: 4P8.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.93

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.164, W.173, R.177 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.164, A:R.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fudo, S. et al., Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit. Biochemistry (2016)

Release Date

2015-12-30

Peptides

Polymerase acidic protein,Polymerase acidic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polymerase acidic protein,Polymerase acidic protein

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