SMTL ID : 5fdn.1

Crystal structure of phosphoenolpyruvate carboxylase from Arabidopsis thaliana in complex with aspartate and citrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x ASP: ASPARTIC ACID(Non-covalent)

ASP.1: 10 residues within 4Å: Chain A: R.663, Q.695, M.847, K.851, L.903, R.906, R.910, L.983, Q.984, N.985 10 PLIP interactions: 9 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:L.903 Hydrogen bonds: A:R.663, A:Q.695, A:L.983, A:N.985, D.1 Salt bridges: A:R.663, A:K.851, A:R.906, A:R.910 ASP.3: 10 residues within 4Å: Chain B: R.663, Q.695, M.847, K.851, L.903, R.906, R.910, L.983, Q.984, N.985 9 PLIP interactions: 8 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: B:R.663, B:Q.695, B:L.983, B:N.985, D.3 Salt bridges: B:R.663, B:K.851, B:R.906, B:R.910 ASP.5: 10 residues within 4Å: Chain C: R.663, Q.695, M.847, K.851, L.903, R.906, R.910, L.983, Q.984, N.985 10 PLIP interactions: 9 interactions with chain C, 1 Ligand-Ligand interactions Hydrophobic interactions: C:L.903 Hydrogen bonds: C:R.663, C:Q.695, C:L.983, C:N.985, D.5 Salt bridges: C:R.663, C:K.851, C:R.906, C:R.910 ASP.7: 10 residues within 4Å: Chain D: R.663, Q.695, M.847, K.851, L.903, R.906, R.910, L.983, Q.984, N.985 9 PLIP interactions: 8 interactions with chain D, 1 Ligand-Ligand interactions Hydrogen bonds: D:R.663, D:Q.695, D:L.983, D:N.985, D.7 Salt bridges: D:R.663, D:K.851, D:R.906, D:R.910

4 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 11 residues within 4Å: Chain A: I.132, R.135, S.151, A.152, T.153, G.665, G.666, P.667, D.900, Y.902, R.906 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.132 Hydrogen bonds: A:S.151, A:A.152, A:T.153, A:G.666 Salt bridges: A:R.135 FLC.4: 12 residues within 4Å: Chain B: I.132, R.135, S.151, A.152, T.153, G.665, G.666, P.667, D.900, Y.902, L.903, R.906 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.132, B:A.152 Hydrogen bonds: B:S.151, B:A.152, B:T.153, B:G.666, B:L.903 Salt bridges: B:R.135 FLC.6: 11 residues within 4Å: Chain C: I.132, R.135, S.151, A.152, T.153, G.665, G.666, P.667, D.900, Y.902, R.906 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.132 Hydrogen bonds: C:S.151, C:A.152, C:T.153, C:G.666 Salt bridges: C:R.135 FLC.8: 12 residues within 4Å: Chain D: I.132, R.135, S.151, A.152, T.153, G.665, G.666, P.667, D.900, Y.902, L.903, R.906 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:I.132, D:A.152 Hydrogen bonds: D:S.151, D:A.152, D:T.153, D:G.666, D:L.903 Salt bridges: D:R.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Connell, M.B. et al., Crystal structure of phosphoenolpyruvate carboxylase from Arabidopsis thaliana in complex with aspartate and citrate. To Be Published

Release Date

2017-02-08

Peptides

Phosphoenolpyruvate carboxylase 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Phosphoenolpyruvate carboxylase 3