SMTL ID : 5fea.1

Domain Swapped Bromodomain from Leishmania donovani

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x BR: BROMIDE ION(Non-covalent)

BR.1: 4 residues within 4Å: Chain A: M.64, S.65, H.68 Chain B: P.45 Ligand excluded by PLIP BR.4: 3 residues within 4Å: Chain A: P.45 Chain B: M.64, S.65 Ligand excluded by PLIP

2 x BMF: Bromosporine(Non-covalent)

BMF.2: 13 residues within 4Å: Chain A: V.40, W.41, R.43, E.44, V.46, L.49, E.52 Chain B: W.41, Y.56, F.99, N.100, L.106 Ligands: BMF.3 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.41, A:V.46, A:L.49, B:L.106 Hydrogen bonds: A:V.40, A:R.43, A:E.44, B:N.100 pi-Stacking: A:W.41 BMF.3: 15 residues within 4Å: Chain A: V.46, L.49, I.53, Y.56, F.99, N.100, L.106 Chain B: V.40, W.41, V.46, L.49, E.52, Y.56, F.99 Ligands: BMF.2 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:V.46, A:I.53, A:F.99, B:W.41, B:L.49, B:L.49, B:Y.56 Hydrogen bonds: A:N.100 Water bridges: A:N.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, J.R. et al., Domain Swapped Bromodomain from Leishmania donovani. To be published

Release Date

2016-01-13

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein