SMTL ID : 5fef.1

Crystal structure of the allergen profilin (Zea m 12)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: D.54, F.55, P.58, G.59, G.78, E.79, P.80, G.81, V.83, I.84 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.55, A:G.59, A:G.78, A:G.81 Water bridges: A:D.54, A:L.61 GOL.2: 1 residues within 4Å: Chain A: K.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.72 GOL.3: 1 residues within 4Å: Chain A: M.74 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.75, A:V.75 GOL.4: 2 residues within 4Å: Chain A: E.129, Q.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.129, A:Q.130 GOL.5: 2 residues within 4Å: Chain A: H.29, K.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.29, A:K.97, A:K.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mares-Mejia, I. et al., Structural insights into the IgE mediated responses induced by the allergens Hev b 8 and Zea m 12 in their dimeric forms. Sci Rep (2016)

Release Date

2016-09-14

Peptides

Profilin-5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Profilin-5