SMTL ID : 5ffl.1

Crystal structure of mouse CD300lf at 1.6 Angstroms resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 13 residues within 4Å: Chain A: Y.35, C.37, Q.42, R.43, C.45, T.47, E.50, T.94, G.97, L.98, D.99, M.101 Ligands: NA.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.94, A:D.99 Water bridges: A:T.47 Salt bridges: A:R.43, A:E.50, A:D.99, A:D.99

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: K.95, G.97, D.99 Ligands: EPE.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.95, A:D.99, A:D.99

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 7 residues within 4Å: Chain A: Q.38, G.39, V.40, P.41, S.44, C.45, K.46 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.46 Water bridges: A:V.40, A:V.40 MPD.4: 6 residues within 4Å: Chain A: D.31, Y.32, K.33, T.94, K.95, G.96 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.31, A:Y.32, A:Y.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orchard, R.C. et al., Discovery of a proteinaceous cellular receptor for a norovirus. Science (2016)

Release Date

2016-08-31

Peptides

CD300 antigen-like family member F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD300 antigen-like family member F

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