SMTL ID : 5fg3.1

Crystal structure of GDP-bound aIF5B from Aeropyrum pernix

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: H.24, V.25, D.26, H.27, G.28, K.29, T.30, T.31, N.141, K.142, D.144, R.145, S.209, A.210, R.211 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:D.26, A:D.26, A:H.27, A:G.28, A:K.29, A:T.30, A:T.30, A:T.31, A:T.31, A:N.141, A:K.142, A:K.142, A:S.209, A:A.210, A:R.211, A:R.211 Water bridges: A:K.29, A:K.29, A:T.30 Salt bridges: A:K.29, A:D.144 pi-Cation interactions: A:K.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murakami, R. et al., Crystal structure of translation initiation factor 5B from the crenarchaeon Aeropyrum pernix. Proteins (2016)

Release Date

2016-05-04

Peptides

Probable translation initiation factor IF-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable translation initiation factor IF-2