SMTL ID : 5fgb.2 (1 other biounit)

Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC33.4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: Q.162, S.164, S.178, S.179, T.180 Chain B: F.180, P.181, V.183, S.191, L.192, S.193 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:F.180, B:S.193, A:S.164, A:T.180 Water bridges: B:S.191, A:T.180 GOL.4: 6 residues within 4Å: Chain B: G.10, G.120, T.121, L.122, P.163, K.215 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.10, B:G.120, B:T.121, B:L.122 Water bridges: B:P.163

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.213 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.213 SO4.3: 3 residues within 4Å: Chain A: S.158, G.159, S.161 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.158, A:G.159 Water bridges: A:N.160, A:S.161, A:S.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keck, Z.Y. et al., Antibody Response to Hypervariable Region 1 Interferes with Broadly Neutralizing Antibodies to Hepatitis C Virus. J.Virol. (2016)

Release Date

2016-01-20

Peptides

Anti-HCV E2 Fab HC84-1 light chain: A
Anti-HCV E2 Fab HC84-1 heavy chain: B
Genome polyprotein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

C
G

Anti-HCV E2 Fab HC84-1 light chain

Anti-HCV E2 Fab HC84-1 heavy chain

Genome polyprotein

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