- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 4 residues within 4Å:- Chain A: Y.42, K.44, Y.277
- Ligands: SO4.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.44
EDO.8: 2 residues within 4Å:- Chain A: Y.247, R.248
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.248
EDO.9: 8 residues within 4Å:- Chain A: K.305, D.367, G.371, R.372, P.373, N.377, L.378
- Ligands: SO4.3
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.305, A:K.305, A:D.367, A:D.367
EDO.10: 6 residues within 4Å:- Chain A: H.78, N.242, F.243, E.282, Y.284, K.418
1 PLIP interactions:1 interactions with chain A- Water bridges: A:N.242
EDO.21: 4 residues within 4Å:- Chain B: Y.42, K.44, Y.277
- Ligands: SO4.18
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.44, B:Y.277
EDO.22: 2 residues within 4Å:- Chain B: Y.247, R.248
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.248
EDO.23: 8 residues within 4Å:- Chain B: K.305, D.367, G.371, R.372, P.373, N.377, L.378
- Ligands: SO4.17
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.305, B:K.305, B:D.367
EDO.24: 6 residues within 4Å:- Chain B: H.78, N.242, F.243, E.282, Y.284, K.418
1 PLIP interactions:1 interactions with chain B- Water bridges: B:N.242
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.11: 3 residues within 4Å:- Chain A: H.149, F.166, K.167
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.167, A:K.167
- Salt bridges: A:H.149
ACT.12: 3 residues within 4Å:- Chain A: A.232, A.233, R.449
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:A.232
- Hydrogen bonds: A:A.233
- Salt bridges: A:R.449
ACT.13: 3 residues within 4Å:- Chain A: W.311, N.341, R.361
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.341
- Water bridges: A:S.339, A:S.339
- Salt bridges: A:R.361
ACT.14: 4 residues within 4Å:- Chain A: K.343, Y.357
- Chain B: K.343
- Ligands: ACT.28
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Y.357
- Salt bridges: A:K.343, B:K.343
ACT.25: 3 residues within 4Å:- Chain B: H.149, F.166, K.167
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.167, B:K.167
- Salt bridges: B:H.149
ACT.26: 3 residues within 4Å:- Chain B: A.232, A.233, R.449
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.232
- Hydrogen bonds: B:A.233
- Salt bridges: B:R.449
ACT.27: 3 residues within 4Å:- Chain B: W.311, N.341, R.361
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.341
- Water bridges: B:S.339, B:S.339
- Salt bridges: B:R.361
ACT.28: 4 residues within 4Å:- Chain A: K.343
- Chain B: K.343, Y.357
- Ligands: ACT.14
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:K.343, A:K.343
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moon, A.F. et al., Structural characterization of the virulence factor Sda1 nuclease from Streptococcus pyogenes. Nucleic Acids Res. (2016)
- Release Date
- 2016-03-30
- Peptides
- Green fluorescent protein,Extracellular streptodornase D: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Moon, A.F. et al., Structural characterization of the virulence factor Sda1 nuclease from Streptococcus pyogenes. Nucleic Acids Res. (2016)
- Release Date
- 2016-03-30
- Peptides
- Green fluorescent protein,Extracellular streptodornase D: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A