SMTL ID : 5fmg.1

Structure and function based design of Plasmodium-selective proteasome inhibitors

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.60 Å

Oligo State

hetero-oligomer

Ligands

2 x 7F1: (2S)-N-[(E,2S)-1-(1H-indol-3-yl)-4-methylsulfonyl-but-3-en-2-yl]-2-[[(2S)-3-(1H-indol-3-yl)-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]-4-methyl-pentanamide(Covalent)

7F1.1: 18 residues within 4Å: Chain I: T.1, A.20, T.21, A.27, C.31, S.32, K.33, H.35, G.47, V.48, A.49, L.52, S.129 Chain J: A.136, D.138, I.140, K.143, C.144 15 PLIP interactions: 13 interactions with chain I, 2 interactions with chain J Hydrophobic interactions: I:T.1, I:A.27, I:K.33, I:K.33, I:A.49, I:L.52, I:L.52 Hydrogen bonds: I:T.21, I:T.21, I:G.47, I:A.49, J:D.138 pi-Cation interactions: I:K.33, I:K.33 Salt bridges: J:D.138 7F1.2: 18 residues within 4Å: Chain W: T.1, A.20, T.21, A.27, C.31, S.32, K.33, H.35, G.47, V.48, A.49, L.52, S.129 Chain X: A.136, D.138, I.140, K.143, C.144 15 PLIP interactions: 13 interactions with chain W, 2 interactions with chain X Hydrophobic interactions: W:T.1, W:A.27, W:K.33, W:K.33, W:A.49, W:L.52, W:L.52 Hydrogen bonds: W:T.21, W:T.21, W:G.47, W:A.49, X:D.138 pi-Cation interactions: W:K.33, W:K.33 Salt bridges: X:D.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Structure and Function Based Design of Plasmodium-Selective Proteasome Inhibitors. Nature (2016)

Release Date

2016-03-02

Peptides

PROTEASOME SUBUNIT ALPHA, PUTATIVE: AO
PROTEASOME SUBUNIT ALPHA TYPE 2, PUTATIVE: BP
PROTEASOME SUBUNIT ALPHA TYPE: CQ
PROTEASOME SUBUNIT ALPHA TYPE: DR
PROTEASOME SUBUNIT ALPHA TYPE: ES
PROTEOSOME SUBUNIT ALPHA TYPE 1, PUTATIVE: FT
PROTEASOME COMPONENT C8, PUTATIVE: GU
PROTEASOME, PUTATIVE: HV
PROTEASOME SUBUNIT BETA TYPE: IW
BETA3 PROTEASOME SUBUNIT, PUTATIVE: JX
PROTEASOME SUBUNIT BETA TYPE: KY
PROTEASOME SUBUNIT BETA TYPE: LZ
PROTEASOME SUBUNIT BETA TYPE: M0
PROTEASOME SUBUNIT BETA TYPE: N1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
P

C
C

Q
Q

D
D

R
R

E
E

S
S

F
F

T
T

G
G

U
U

H
H

V
V

I
I

W
W

J
J

X
X

K
K

Y
Y

L
L

Z
Z

M
M

0
a

N
N

1
b

PROTEASOME SUBUNIT ALPHA, PUTATIVE

PROTEASOME SUBUNIT ALPHA TYPE 2, PUTATIVE

PROTEASOME SUBUNIT ALPHA TYPE

PROTEASOME SUBUNIT ALPHA TYPE

PROTEASOME SUBUNIT ALPHA TYPE

PROTEOSOME SUBUNIT ALPHA TYPE 1, PUTATIVE

PROTEASOME COMPONENT C8, PUTATIVE

PROTEASOME, PUTATIVE

PROTEASOME SUBUNIT BETA TYPE

BETA3 PROTEASOME SUBUNIT, PUTATIVE

PROTEASOME SUBUNIT BETA TYPE

PROTEASOME SUBUNIT BETA TYPE

PROTEASOME SUBUNIT BETA TYPE

PROTEASOME SUBUNIT BETA TYPE

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