SMTL ID : 5fmk.1

Bcl-xL with Bak BH3 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-2-2-mer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: N.85, W.86, W.130, L.143 Chain B: N.24, R.25, R.26 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:W.86, B:N.24 GOL.2: 3 residues within 4Å: Chain A: P.65, G.66, R.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.114, A:R.114 GOL.3: 9 residues within 4Å: Chain A: D.16, R.40 Chain C: S.19, Y.20, S.23, A.33, K.36, Q.37, R.40 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:S.23, C:S.23, A:D.16, A:R.40, A:R.40 Water bridges: C:S.19, C:S.19, C:K.36 GOL.4: 3 residues within 4Å: Chain A: N.85 Chain B: D.21, R.26 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.85, B:R.26 GOL.5: 7 residues within 4Å: Chain C: N.85, W.86, W.130, L.143 Chain D: N.24, R.25, R.26 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:N.24, C:W.86 GOL.6: 3 residues within 4Å: Chain C: P.65, G.66, R.114 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.114, C:R.114 GOL.7: 9 residues within 4Å: Chain A: S.19, Y.20, S.23, A.33, K.36, Q.37, R.40 Chain C: D.16, R.40 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:S.23, A:S.23, C:D.16, C:R.40, C:R.40 Water bridges: A:S.19, A:S.19, A:K.36 GOL.8: 3 residues within 4Å: Chain C: N.85 Chain D: D.21, R.26 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:N.85, D:R.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, E.F. et al., Physiological Restraint of Bak by Bcl-Xl is Essential for Cell Survival. Genes Dev. (2016)

Release Date

2016-06-01

Peptides

BCL-XL: AC
BCL-2 HOMOLOGOUS ANTAGONIST/KILLER: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

BCL-XL

BCL-2 HOMOLOGOUS ANTAGONIST/KILLER

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