SMTL ID : 5fml.1

Crystal structure of the endonuclease from the PA subunit of influenza B virus bound to the PB2 subunit NLS peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain B: H.46, D.114, E.125, V.126 Ligands: MG.2 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.46, B:D.114, B:V.126, H2O.2 MG.2: 4 residues within 4Å: Chain B: H.46, E.86, D.114 Ligands: MG.1 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.86, B:D.114, H2O.2, H2O.3, H2O.3

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain B: E.28, R.90, T.91 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.90 Water bridges: B:E.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thierry, E. et al., Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of Pb2 Domains. Mol.Cell (2016)

Release Date

2016-01-13

Peptides

PB2 SUBUNIT OF INFLUENZA B POLYMERASE: A
PA SUBUNIT OF INFLUENZA B POLYMERASE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PB2 SUBUNIT OF INFLUENZA B POLYMERASE

PA SUBUNIT OF INFLUENZA B POLYMERASE