SMTL ID : 5fmv.2 (1 other biounit)

Crystal structure of human CD45 extracellular region, domains d1-d4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: D.77, N.116, Y.152, N.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.116, A:N.153 NAG.2: 5 residues within 4Å: Chain A: H.298, E.300, L.307, N.310, Y.334 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.307 Hydrogen bonds: A:E.300, A:Y.334 NAG.3: 2 residues within 4Å: Chain A: W.268, N.269 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.268 Hydrogen bonds: A:N.269 NAG.4: 3 residues within 4Å: Chain A: H.199, N.200, N.215 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.200 NAG.5: 4 residues within 4Å: Chain A: T.202, H.239, Q.247, N.249 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.247 NAG.6: 3 residues within 4Å: Chain A: N.159, A.160, S.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.159, A:S.161

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 4 residues within 4Å: Chain A: R.296, S.312, H.313, K.314 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.314 Salt bridges: A:R.296, A:H.313, A:K.314 SO4.8: 3 residues within 4Å: Chain A: W.268, R.285, R.288 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.268 Salt bridges: A:R.285, A:R.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, V.T. et al., Initiation of T Cell Signaling by Cd45 Segregation at 'Close Contacts'. Nat.Immunol. (2016)

Release Date

2016-03-23

Peptides

RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C

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