SMTL ID : 5fn8.2 (3 other biounits)

Crystal structure of rat CD45 extracellular region, domains d3-d4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: R.130, I.132, N.146, Y.170, L.175 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.132, A:Y.170, A:L.175 Hydrogen bonds: A:Y.170 Water bridges: A:Y.170 NAG.2: 3 residues within 4Å: Chain A: N.18 Chain B: A.96, R.97 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.96 Hydrogen bonds: B:R.97, A:N.18 NAG.3: 3 residues within 4Å: Chain A: S.107, R.108, N.115 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.107, A:N.115 NAG.5: 5 residues within 4Å: Chain B: R.130, I.132, N.146, Y.170, L.175 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.132, B:Y.170, B:L.175 Hydrogen bonds: B:Y.170 Water bridges: B:Y.170 NAG.6: 3 residues within 4Å: Chain A: A.96, R.97 Chain B: N.18 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.96 Hydrogen bonds: A:R.97, B:N.18 NAG.7: 3 residues within 4Å: Chain B: S.107, R.108, N.115 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.107, B:N.115

2 x FLC: CITRATE ANION(Non-covalent)

FLC.4: 5 residues within 4Å: Chain A: R.130, N.146, Q.147, S.148, T.149 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.147 Hydrogen bonds: A:R.130, A:Q.147, A:S.148, A:S.148, A:S.148 Salt bridges: A:R.130 FLC.8: 5 residues within 4Å: Chain B: R.130, N.146, Q.147, S.148, T.149 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Q.147 Hydrogen bonds: B:R.130, B:Q.147, B:S.148, B:S.148, B:S.148 Salt bridges: B:R.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, V.T. et al., Initiation of T Cell Signaling by Cd45 Segregation at 'Close Contacts'. Nat.Immunol. (2016)

Release Date

2016-03-23

Peptides

RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C

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