SMTL ID : 5fne.1

CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE FROM PLEUROTUS ERYNGII TRIPLE MUTANT E37K, H39R & G330R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.48, G.60, D.62, S.64 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.48, A:D.62, A:S.64, H2O.4, H2O.4 CA.2: 5 residues within 4Å: Chain A: S.170, D.187, T.189, V.192, D.194 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.187, A:D.187, A:T.189, A:V.192, A:D.194

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 23 residues within 4Å: Chain A: R.39, E.40, L.42, R.43, T.45, F.46, P.139, E.140, P.141, I.148, L.165, L.166, S.168, H.169, A.172, A.173, A.174, D.175, K.176, V.177, F.186, L.228, S.230 29 PLIP interactions: 28 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.42, A:L.42, A:R.43, A:F.46, A:F.46, A:F.46, A:F.46, A:P.139, A:P.141, A:I.148, A:L.165, A:L.166, A:A.172, A:A.174, A:V.177, A:F.186, A:F.186, A:L.228 Hydrogen bonds: A:A.173, A:D.175, A:K.176, A:V.177 Water bridges: A:R.39, A:R.43, A:D.175 Salt bridges: A:R.39, A:R.43 Metal complexes: A:H.169, H2O.4

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: S.86, K.89 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.69 Salt bridges: A:K.89 SO4.5: 5 residues within 4Å: Chain A: F.142, K.215, G.216, E.217, Q.229 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.216, A:Q.229 SO4.6: 4 residues within 4Å: Chain A: A.218, Q.219, Q.229, H.232 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.219, A:Q.219, A:Q.229 Salt bridges: A:H.232 SO4.7: 2 residues within 4Å: Chain A: D.237, P.238 No protein-ligand interaction detected (PLIP) SO4.8: 4 residues within 4Å: Chain A: W.164, E.243, K.253, R.257 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.243, A:E.243, A:K.253 Salt bridges: A:K.253, A:R.257 SO4.9: 4 residues within 4Å: Chain A: A.77, H.136, E.140, F.142 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.77, A:E.140 Water bridges: A:V.138 Salt bridges: A:H.136 SO4.10: 3 residues within 4Å: Chain A: S.246, N.250, K.253 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.250 Salt bridges: A:K.253 SO4.11: 2 residues within 4Å: Chain A: G.57, G.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.58 Water bridges: A:G.59 SO4.12: 4 residues within 4Å: Chain A: A.79, G.80, I.81, K.176 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.80, A:I.81 Water bridges: A:D.82, A:D.82 Salt bridges: A:K.176 SO4.13: 2 residues within 4Å: Chain A: P.134, D.135 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saez-Jimenez, V. et al., Unveiling the Basis of Alkaline Stability of an Evolved Versatile Peroxidase. Biochem.J. (2016)

Release Date

2016-07-13

Peptides

VERSATILE PEROXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VERSATILE PEROXIDASE