SMTL ID : 5fo0.1

D298E mutant of FAD synthetase from Corynebacterium ammoniagenes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

homo-hexamer

Ligands

6 x PPV: PYROPHOSPHATE(Non-covalent)

PPV.1: 8 residues within 4Å: Chain A: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:V.23, A:F.24, A:N.125, A:S.164 Water bridges: A:D.25, A:D.25, A:S.163, A:T.165 Salt bridges: A:H.28, A:H.31, A:H.31 PPV.3: 8 residues within 4Å: Chain B: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:V.23, B:F.24, B:N.125, B:S.164, B:S.164 Water bridges: B:D.25, B:S.164, B:S.164, B:R.168 Salt bridges: B:H.28, B:H.31, B:H.31 PPV.5: 8 residues within 4Å: Chain C: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:V.23, C:F.24, C:N.125, C:S.164 Water bridges: C:D.25, C:D.25, C:S.163, C:T.165 Salt bridges: C:H.28, C:H.31, C:H.31 PPV.7: 8 residues within 4Å: Chain D: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:V.23, D:F.24, D:N.125, D:S.164, D:S.164 Water bridges: D:D.25, D:S.164, D:S.164, D:R.168 Salt bridges: D:H.28, D:H.31, D:H.31 PPV.9: 8 residues within 4Å: Chain E: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 11 PLIP interactions: 10 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:V.23, E:F.24, E:N.125, E:S.164 Water bridges: E:D.25, E:D.25, E:S.163, A:E.298 Salt bridges: E:H.28, E:H.31, E:H.31 PPV.11: 8 residues within 4Å: Chain F: G.22, V.23, F.24, H.28, H.31, N.125, S.163, S.164 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:V.23, F:F.24, F:N.125, F:S.164, F:S.164 Water bridges: F:D.25, F:S.164, F:S.164, F:R.168 Salt bridges: F:H.28, F:H.31, F:H.31

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.73, L.74 Chain B: R.195, Y.279 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.279, A:L.74 Salt bridges: B:R.195 SO4.4: 3 residues within 4Å: Chain A: Y.279 Chain B: T.73, L.74 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.74 SO4.6: 4 residues within 4Å: Chain C: T.73, L.74 Chain D: R.195, Y.279 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Y.279, C:L.74 Salt bridges: D:R.195 SO4.8: 3 residues within 4Å: Chain C: Y.279 Chain D: T.73, L.74 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:L.74, C:Y.279 SO4.10: 4 residues within 4Å: Chain E: T.73, L.74 Chain F: R.195, Y.279 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:L.74 Salt bridges: F:R.195 SO4.12: 3 residues within 4Å: Chain E: Y.279 Chain F: T.73, L.74 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:L.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serrano, A. et al., The trimer interface in the quaternary structure of the bifunctional prokaryotic FAD synthetase from Corynebacterium ammoniagenes. Sci Rep (2017)

Release Date

2016-11-30

Peptides

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF