SMTL ID : 5foe.1 (1 other biounit)

Crystal structure of the C. elegans Protein O-fucosyltransferase 2 (CePOFUT2) double mutant (R298K-R299K) in complex with GDP and the human TSR1 from thrombospondin 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.149, E.150, K.151, H.203, N.205 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.149 Hydrogen bonds: A:K.151, A:H.203 Water bridges: A:Q.186, A:N.205, A:N.205

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 15 residues within 4Å: Chain A: G.53, F.54, N.55, L.56, H.288, R.290, A.327, T.328, D.329, I.362, A.363, D.366, S.382, T.383, F.384 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:F.54, A:N.55, A:N.55, A:L.56, A:T.383, A:T.383, A:F.384 Water bridges: A:A.363, A:A.363, A:E.381, A:Q.497 Salt bridges: A:R.290, A:D.366

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: D.359, G.360 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: A.97, S.176, Y.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.176 EDO.5: 3 residues within 4Å: Chain A: K.419, K.421, V.423 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.421 Water bridges: A:G.226, A:K.421 EDO.6: 1 residues within 4Å: Chain A: R.101 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain A: T.460, Q.472, R.473, G.474, V.489 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valero-Gonzalez, J. et al., A Proactive Role of Water Molecules in Acceptor Recognition of Thrombospondin Type 1 Repeats by Protein-O-Fucosyltransferase 2. Nat.Chem.Biol. (2016)

Release Date

2016-01-27

Peptides

GDP-fucose protein O-fucosyltransferase 2,Thrombospondin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GDP-fucose protein O-fucosyltransferase 2,Thrombospondin-1

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