SMTL ID : 5foh.1

Crystal structure of the catalytic domain of NcLPMO9A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.1: 3 residues within 4Å: Chain A: P.197, T.211, T.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.211, A:T.211 MAN.2: 2 residues within 4Å: Chain A: K.219, T.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.219, A:K.219 Water bridges: A:K.219

1 x CU: COPPER (II) ION(Non-covalent)

CU.3: 5 residues within 4Å: Chain A: H.1, H.81, Q.162, Y.164 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.1, A:H.81, A:Y.164

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: H.1, H.81, H.153, Q.162 Ligands: CU.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.162, A:Q.162 Salt bridges: A:H.1, A:H.81, A:H.153 SO4.5: 3 residues within 4Å: Chain A: Y.14, P.15, Y.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.18 SO4.6: 5 residues within 4Å: Chain A: P.182, S.183, T.184, F.220 Ligands: LI.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.183, A:T.184, A:T.184

1 x LI: LITHIUM ION(Non-covalent)

LI.7: 2 residues within 4Å: Chain A: S.183 Ligands: SO4.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrovic, D.M. et al., Comparison of three seemingly similar lytic polysaccharide monooxygenases fromNeurospora crassasuggests different roles in plant biomass degradation. J.Biol.Chem. (2019)

Release Date

2016-12-07

Peptides

POLYSACCHARIDE MONOOXYGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POLYSACCHARIDE MONOOXYGENASE