SMTL ID : 5foq.1

Acetylcholinesterase in complex with C7653

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: G.345, S.347, N.350, S.352, L.353 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.345, A:S.347, A:N.350 NAG.2: 2 residues within 4Å: Chain A: S.462, N.464 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.462, A:N.464 NAG.6: 4 residues within 4Å: Chain B: G.345, S.347, N.350, L.353 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.345, B:S.347, B:N.350

2 x GC8: 2-(2,4-dichlorophenoxy)-N-[4-(1-piperidinylmethyl)phenyl]acetamide(Non-covalent)

GC8.3: 15 residues within 4Å: Chain A: Y.72, D.74, W.86, G.120, G.121, Y.124, Y.133, E.202, W.286, F.297, Y.337, F.338, Y.341, H.447, G.448 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.72, A:W.86, A:Y.337, A:F.338 Hydrogen bonds: A:Y.124 Salt bridges: A:E.202 pi-Stacking: A:W.286, A:W.286 pi-Cation interactions: A:W.86, A:W.86 GC8.7: 14 residues within 4Å: Chain B: Y.72, D.74, W.86, G.120, G.121, Y.124, Y.133, E.202, W.286, F.297, Y.337, F.338, Y.341, H.447 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.72, B:W.86, B:Y.337, B:F.338 Salt bridges: B:E.202 pi-Stacking: B:W.286, B:W.286 pi-Cation interactions: B:W.86, B:W.86 Halogen bonds: B:D.74

4 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.4: 4 residues within 4Å: Chain A: V.303, D.304, G.305, S.309 No protein-ligand interaction detected (PLIP) PG0.5: 6 residues within 4Å: Chain A: H.381, Y.382, T.383, R.525, T.528 Chain B: Q.527 No protein-ligand interaction detected (PLIP) PG0.8: 6 residues within 4Å: Chain A: Q.527 Chain B: H.381, Y.382, T.383, D.384 Ligands: P15.10 No protein-ligand interaction detected (PLIP) PG0.9: 5 residues within 4Å: Chain B: V.303, D.304, G.305, S.309, D.310 No protein-ligand interaction detected (PLIP)

1 x P15: 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL(Non-covalent)

P15.10: 16 residues within 4Å: Chain A: A.377, L.380, H.381, Q.527, T.528, A.530, F.531, F.535 Chain B: A.377, L.380, H.381, Q.527, T.528, F.531, F.535 Ligands: PG0.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Berg, L. et al., The Nature of Activated Non-Classical Hydrogen Bonds: A Case Study on Acetylcholinesterase-Ligand Complexes. Chemistry (2016)

Release Date

2016-03-02

Peptides

ACETYLCHOLINESTERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACETYLCHOLINESTERASE

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