SMTL ID : 5fqm.1

Last common ancestor of Gram Negative Bacteria (GNCA) Class A beta- lactamase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: S.45, S.105, T.191, T.210, G.211, T.212 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.45, A:S.105, A:R.195, A:T.210, A:G.211, A:T.212 Water bridges: A:S.45, A:T.212 Salt bridges: A:K.209

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: N.145, E.146 2 PLIP interactions: 2 interactions with chain A Water bridges: A:P.142, A:N.145 GOL.3: 4 residues within 4Å: Chain A: K.190, T.191, G.192, D.193 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.191, A:D.193, A:D.193, A:D.193 Water bridges: A:G.192, A:R.195 GOL.4: 4 residues within 4Å: Chain A: R.136, P.152, R.153 Ligands: GOL.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.136, A:R.136 GOL.5: 3 residues within 4Å: Chain A: E.146, A.148, H.215 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.146 Water bridges: A:E.146, A:H.215 GOL.6: 8 residues within 4Å: Chain A: R.19, R.40, F.41, P.42, P.149, G.150, D.151, T.155 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.19, A:G.150, A:D.151 Water bridges: A:R.19, A:D.151, A:E.240 GOL.7: 7 residues within 4Å: Chain A: I.130, G.131, D.132, A.160, A.163, T.164, T.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.130, A:D.132, A:T.164, A:T.167 GOL.8: 5 residues within 4Å: Chain A: A.95, E.96, E.99, Q.181, W.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.99, A:Q.181 GOL.9: 4 residues within 4Å: Chain A: D.172, L.174, S.175, P.176 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.174 GOL.10: 4 residues within 4Å: Chain A: L.77, V.78, D.79, P.142 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.79 GOL.11: 4 residues within 4Å: Chain A: A.34, Y.35, R.36, G.37 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.34, A:R.36, A:G.37 Water bridges: A:D.38, A:E.39 GOL.12: 4 residues within 4Å: Chain A: R.128, R.136, D.138 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.128, A:D.138 Water bridges: A:T.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Risso, V.A. et al., De novo active sites for resurrected Precambrian enzymes. Nat Commun (2017)

Release Date

2017-01-18

Peptides

GNCA BETA LACTAMASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GNCA BETA LACTAMASE