SMTL ID : 5fqo.1

Crystal structure of M. musculus protein arginine methyltransferase PRMT6 with SAH and magnesium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: H.84, M.87, I.88, R.93, G.117, A.118, G.119, I.122, L.123, V.138, E.139, A.140, S.141, G.165, P.166, V.167, E.168, E.182, M.193, S.196 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:H.84, A:G.117, A:G.119, A:A.140, A:V.167, A:E.168, A:S.196 Water bridges: A:G.121, A:S.141, A:S.141, A:R.378 Salt bridges: A:R.93 SAH.3: 20 residues within 4Å: Chain B: H.84, M.87, I.88, R.93, G.117, A.118, G.119, I.122, L.123, V.138, E.139, A.140, S.141, G.165, P.166, V.167, E.168, E.182, M.193, S.196 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:H.84, B:G.117, B:G.119, B:A.140, B:V.167, B:E.168, B:S.196 Water bridges: B:G.121, B:S.141, B:S.141, B:R.378 Salt bridges: B:R.93

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: E.182, M.184, G.185, W.345 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:M.184, H2O.1, H2O.1, H2O.4, H2O.4, H2O.4 MG.4: 4 residues within 4Å: Chain B: E.182, M.184, G.185, W.345 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:M.184, H2O.11, H2O.11, H2O.14, H2O.14, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonnefond, L. et al., Crystal Strcutures of Prmt6 in Complex with Sah in Alternative Conformations. To be Published

Release Date

2017-01-18

Peptides

PROTEIN ARGININE N-METHYLTRANSFERASE 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN ARGININE N-METHYLTRANSFERASE 6

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