SMTL ID : 5fqu.1

Orthorhombic crystal structure of of PlpD (selenomethionine derivative)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

homo-dimer

Ligands

1 x AZI: AZIDE ION(Non-covalent)

AZI.1: 4 residues within 4Å: Chain B: E.180, I.181 Ligands: NA.2, NA.3 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.180

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Ligands: AZI.1 No protein-ligand interaction detected (PLIP) NA.3: 4 residues within 4Å: Chain A: R.220 Chain B: R.184, L.185 Ligands: AZI.1 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.220, B:R.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Da Mata Madeira, P.V. et al., Structural Basis of Lipid Targeting and Destruction by the Type V Secretion System of Pseudomonas Aeruginosa. J.Mol.Biol. (2016)

Release Date

2016-04-06

Peptides

PATATIN-LIKE PROTEIN, PLPD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PATATIN-LIKE PROTEIN, PLPD

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