SMTL ID : 5fra.2 (5 other biounits)

CBM40_CPF0721-6'SL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose(Non-covalent)

GAL-SIA.1: 11 residues within 4Å: Chain A: I.54, N.67, Y.69, Y.73, E.82, R.84, Q.93, H.101, R.161, N.166, Y.168 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.73 Hydrogen bonds: A:Y.69, A:E.82, A:N.166 Water bridges: A:R.84, A:N.98, A:R.161, A:R.161 Salt bridges: A:R.84, A:R.161

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: L.8, L.9, S.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.8 Water bridges: A:S.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ribeiro, J.P. et al., Characterization of a High-Affinity Sialic Acid-Specific Cbm40 from Clostridium Perfringens and Engineering of a Divalent Form. Biochem.J. (2016)

Release Date

2016-07-20

Peptides

SIALIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SIALIDASE

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