SMTL ID : 5frq.1

Crystal Structure of Helicobacter pylori beta clamp bound to DNA ligase peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

2 x PHE- ILE- ARG- SER- LEU- PHE: DNA LIGASE(Non-covalent)

PHE-ILE-ARG-SER-LEU-PHE.1: 15 residues within 4Å: Chain A: T.175, T.177, K.178, R.179, L.180, P.245, I.250, F.326, S.347, P.349, L.370, M.372, P.373, I.374, T.375 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:T.175, A:K.178, A:L.180, A:P.245, A:I.250, A:I.250, A:F.326, A:P.349, A:L.370, A:M.372, A:I.374, A:T.375 Hydrogen bonds: A:T.177, A:T.375 PHE-ILE-ARG-SER-LEU-PHE.2: 13 residues within 4Å: Chain D: T.175, T.177, K.178, L.180, P.245, I.250, S.347, P.349, L.370, M.372, P.373, I.374, T.375 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:T.175, D:K.178, D:L.180, D:P.245, D:P.245, D:I.250, D:I.250, D:P.349, D:L.370, D:I.374 Hydrogen bonds: D:T.177, D:P.373, D:P.373, D:P.373

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, P. et al., Structural Insight Into Beta-Clamp and its Interaction with DNA Ligase in Helicobacter Pylori. Sci.Rep. (2016)

Release Date

2016-08-17

Peptides

DNA POLYMERASE III SUBUNIT BETA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DNA POLYMERASE III SUBUNIT BETA

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