SMTL ID : 5fsc.1 (2 other biounits)

Structure of tectonin 2 from Laccaria bicolor in complex with allyl- alpha_4-methyl-mannoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 2 residues within 4Å: Chain A: R.12, D.203 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain B: R.12, D.203 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain C: R.12, D.203 No protein-ligand interaction detected (PLIP) MG.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

15 x G8Z: prop-2-en-1-yl 4-O-methyl-alpha-D-mannopyranoside(Non-covalent)

G8Z.2: 6 residues within 4Å: Chain A: G.83, A.84, L.85, N.100, Y.106, W.116 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.84, A:A.84, A:N.100 Water bridges: A:N.100, A:Y.106, A:W.116, A:W.116 G8Z.3: 8 residues within 4Å: Chain A: G.121, V.122, L.123, N.138, E.142, Y.144, N.154, W.156 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.122, A:V.122, A:N.138, A:E.142, A:N.154 Water bridges: A:Y.144 G8Z.4: 7 residues within 4Å: Chain A: G.161, A.162, L.163, N.178, N.182, Y.184, W.194 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.162, A:A.162, A:N.178, A:N.182, A:Y.184 Water bridges: A:W.194 G8Z.6: 6 residues within 4Å: Chain B: G.83, A.84, L.85, N.100, Y.106, W.116 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.84, B:A.84, B:N.100 Water bridges: B:N.100, B:Y.106, B:W.116, B:W.116 G8Z.7: 8 residues within 4Å: Chain B: G.121, V.122, L.123, N.138, E.142, Y.144, N.154, W.156 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.122, B:V.122, B:N.138, B:E.142, B:N.154 Water bridges: B:Y.144 G8Z.8: 7 residues within 4Å: Chain B: G.161, A.162, L.163, N.178, N.182, Y.184, W.194 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.162, B:A.162, B:N.178, B:N.182, B:Y.184 Water bridges: B:W.194 G8Z.10: 6 residues within 4Å: Chain C: G.83, A.84, L.85, N.100, Y.106, W.116 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:A.84, C:A.84, C:N.100 Water bridges: C:N.100, C:Y.106, C:W.116, C:W.116 G8Z.11: 8 residues within 4Å: Chain C: G.121, V.122, L.123, N.138, E.142, Y.144, N.154, W.156 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:V.122, C:V.122, C:N.138, C:E.142, C:N.154 Water bridges: C:Y.144 G8Z.12: 7 residues within 4Å: Chain C: G.161, A.162, L.163, N.178, N.182, Y.184, W.194 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:A.162, C:A.162, C:N.178, C:N.182, C:Y.184 Water bridges: C:W.194 G8Z.14: 6 residues within 4Å: Chain D: G.8, S.9, L.10, N.25, Y.31, W.41 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.9, D:S.9, D:N.25, D:Y.31 Water bridges: D:W.41 G8Z.15: 6 residues within 4Å: Chain D: G.46, A.47, L.48, N.63, Y.69, W.78 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:A.47, D:A.47, D:N.63, D:N.67, D:Y.69 Water bridges: D:W.78 G8Z.16: 6 residues within 4Å: Chain D: G.83, A.84, L.85, N.100, Y.106, W.116 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:A.84, D:A.84, D:N.100, D:Y.106 Water bridges: D:W.116 G8Z.17: 7 residues within 4Å: Chain D: G.121, V.122, L.123, N.138, E.142, Y.144, W.156 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:V.122, D:V.122, D:N.138, D:E.142, D:Y.144 Water bridges: D:W.156 G8Z.18: 6 residues within 4Å: Chain D: G.161, A.162, L.163, N.178, Y.184, W.194 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:A.162, D:A.162, D:N.178, D:Y.184 Water bridges: D:W.194 G8Z.19: 6 residues within 4Å: Chain D: W.3, G.199, S.200, L.201, N.216, Y.222 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.200, D:S.200, D:N.216, D:Y.222 Water bridges: D:W.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sommer, R. et al., Crystal Structures of Fungal Tectonin in Complex with O-Methylated Glycans Suggest Key Role in Innate Immune Defense. Structure (2018)

Release Date

2017-03-29

Peptides

TECTONIN 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
B

TECTONIN 2

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