- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x QBT: [(2R,3S,5R)-3-HYDROXY-5-[(5S)-5-METHYL-2,4-DIOXO-1,3-DIAZINAN-1-YL]OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE(Non-covalent)
QBT.2: 18 residues within 4Å:- Chain A: M.12, K.16, T.17, E.84, Q.86, F.87, L.110, D.113, Y.114, T.150, R.152, R.159, K.160, L.161, V.162, G.163, Y.168
- Ligands: PO4.1
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:L.110, A:T.150, A:Y.168, A:Y.168
- Hydrogen bonds: A:T.17, A:T.17, A:Q.86, A:Y.114, A:R.152, A:R.159, A:L.161, A:G.163
- Salt bridges: A:K.16
QBT.5: 18 residues within 4Å:- Chain B: M.12, K.16, T.17, E.84, Q.86, F.87, L.110, D.113, Y.114, T.150, R.152, R.159, K.160, L.161, V.162, G.163, Y.168
- Ligands: PO4.4
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:L.110, B:T.150, B:Y.168, B:Y.168
- Hydrogen bonds: B:T.17, B:T.17, B:Q.86, B:Y.114, B:R.152, B:R.159, B:L.161, B:G.163, B:Y.168
- Salt bridges: B:K.16
QBT.8: 17 residues within 4Å:- Chain C: M.12, K.16, T.17, E.84, Q.86, F.87, L.110, D.113, Y.114, T.150, R.159, K.160, L.161, V.162, G.163, Y.168
- Ligands: PO4.7
12 PLIP interactions:12 interactions with chain C- Hydrophobic interactions: C:L.110, C:T.150, C:Y.168, C:Y.168
- Hydrogen bonds: C:T.17, C:Q.86, C:Y.114, C:R.159, C:L.161, C:G.163, C:Y.168
- Salt bridges: C:K.16
QBT.11: 16 residues within 4Å:- Chain D: M.12, K.16, E.84, Q.86, F.87, L.110, D.113, Y.114, T.150, R.159, K.160, L.161, V.162, G.163, Y.168
- Ligands: PO4.10
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:L.110, D:T.150, D:Y.168, D:Y.168
- Hydrogen bonds: D:Q.86, D:Y.114, D:R.159, D:L.161, D:G.163, D:Y.168
- Salt bridges: D:K.16
- 4 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: C.139, C.142, C.172, C.175
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.139, A:C.142, A:C.172, A:C.175
ZN.6: 4 residues within 4Å:- Chain B: C.139, C.142, C.172, C.175
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.139, B:C.142, B:C.172, B:C.175
ZN.9: 4 residues within 4Å:- Chain C: C.139, C.142, C.172, C.175
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:C.139, C:C.142, C:C.172, C:C.175
ZN.12: 4 residues within 4Å:- Chain D: C.139, C.142, C.172, C.175
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.139, D:C.142, D:C.172, D:C.175
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Valente, M. et al., Cell Cycle Regulation and Novel Structural Features of Thymidine Kinase, an Essential Enzyme in Trypanosoma Brucei. Mol.Microbiol. (2016)
- Release Date
- 2016-07-27
- Peptides
- THYMDINE KINASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x QBT: [(2R,3S,5R)-3-HYDROXY-5-[(5S)-5-METHYL-2,4-DIOXO-1,3-DIAZINAN-1-YL]OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Valente, M. et al., Cell Cycle Regulation and Novel Structural Features of Thymidine Kinase, an Essential Enzyme in Trypanosoma Brucei. Mol.Microbiol. (2016)
- Release Date
- 2016-07-27
- Peptides
- THYMDINE KINASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D