SMTL ID : 5fvf.1

Room temperature structure of IrisFP determined by serial femtosecond crystallography.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

19 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: D.202, K.203 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: R.149, D.150, G.151 Chain D: A.167 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: E.48, G.49 Ligands: NH4.5, NH4.6 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: N.19, H.24 Chain B: R.104, R.119 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: K.85, K.180, E.181 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: R.119 Chain B: N.19, H.24, H.121 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: E.48, G.49, G.50 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: A.167 Chain C: V.148, R.149, D.150 Ligand excluded by PLIP SO4.11: 1 residues within 4Å: Chain C: K.11 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain C: R.104, R.119 Chain D: N.19, H.24, H.121 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain C: E.48, G.49 Ligand excluded by PLIP SO4.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain C: D.202, K.203 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: N.19, H.24, H.121 Chain D: R.119 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain A: A.167 Chain D: R.149, D.150 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain D: K.47, E.48, G.49 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain D: R.15, K.47 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain D: H.201, D.202, K.203 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain D: P.53, K.134 Ligand excluded by PLIP

2 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.5: 1 residues within 4Å: Ligands: SO4.3 No protein-ligand interaction detected (PLIP) NH4.6: 1 residues within 4Å: Ligands: SO4.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Colletier, J. et al., Serial Femtosecond Crystallography and Ultrafast Absorption Spectroscopy of the Photoswitchable Fluorescent Protein Irisfp. J.Phys.Chem.Lett. (2016)

Release Date

2016-04-06

Peptides

Green to red photoconvertible GFP-like protein EosFP: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Green to red photoconvertible GFP-like protein EosFP

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