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SMTL ID : 5fvo.1

Structure of rat neuronal nitric oxide synthase heme domain in complex with 6-(2-(5-(3-methoxypropylamino)pyridin-3-yl)ethyl)-4- methylpyridin-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1:

18 residues within 4Å:

Chain A: W.113, A.116, R.118, C.119, V.120, L.128, S.161, F.288, S.289, G.290, W.291, M.293, E.296, W.382, F.408, Y.410
Ligands: H4B.2, D8H.3

19 PLIP interactions:

19 interactions with chain A,

Hydrophobic interactions: A:W.113, A:W.113, A:A.116, A:R.118, A:L.128, A:F.288, A:F.288, A:F.288, A:W.291, A:E.296, A:W.382, A:W.382, A:F.408, A:F.408
Hydrogen bonds: A:Y.410
Water bridges: A:E.296, A:W.382
pi-Stacking: A:W.113
Metal complexes: A:C.119

1 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)

H4B.2:

5 residues within 4Å:

Chain A: S.38, R.300, V.381, W.382
Ligands: HEM.1

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:R.300, A:V.381, A:W.382
pi-Stacking: A:W.382, A:W.382
pi-Cation interactions: A:W.382

1 x D8H: 6-(2-(5-(3-methoxypropylamino)pyridin-3-yl)ethyl)-4-methylpyridin-2-amine(Non-covalent)

D8H.3:

12 residues within 4Å:

Chain A: M.40, Q.182, P.269, V.271, F.288, S.289, G.290, W.291, Y.292, E.296, W.382
Ligands: HEM.1

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:P.269, A:V.271, A:F.288
Hydrogen bonds: A:Q.182, A:E.296

1 x ZN: ZINC ION(Non-covalent)

ZN.4:

3 residues within 4Å:

Chain A: C.30, C.35, M.36

2 PLIP interactions:

2 interactions with chain A

Metal complexes: A:C.30, A:C.35

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wang, H. et al., Potent and Selective Human Neuronal Nitric Oxide Synthase Inhibition by Optimization of the 2-Aminopyridine-Based Scaffold with a Pyridine Linker. J.Med.Chem. (2016)

Release Date

2016-04-20

Peptides

NITRIC OXIDE SYNTHASE, BRAIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

NITRIC OXIDE SYNTHASE, BRAIN

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