SMTL ID : 5fwq.1

Apo structure of human Leukotriene A4 hydrolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 9 residues within 4Å: Chain A: G.284, E.286, H.310, E.311, H.314, E.333, Y.393, Y.398 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.284 Salt bridges: A:H.310, A:H.314

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.310, H.314, E.333, Y.398 Ligands: ACT.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.310, A:H.314, A:E.333, A:E.333, ACT.1

6 x YB: YTTERBIUM (III) ION(Non-covalent)

YB.3: 1 residues within 4Å: Chain A: D.496 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.496, H2O.13, H2O.13, H2O.16, H2O.16 YB.4: 1 residues within 4Å: Chain A: E.136 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.136 YB.5: 2 residues within 4Å: Chain A: D.437, D.441 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.437, A:D.437, A:D.441, A:D.441, H2O.12 YB.6: 1 residues within 4Å: Chain A: D.62 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.62, A:D.62, H2O.2 YB.7: 1 residues within 4Å: Chain A: E.61 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.61, A:E.61, H2O.2 YB.11: 1 residues within 4Å: Chain A: D.190 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.190

3 x IMD: IMIDAZOLE(Non-covalent)

IMD.8: 7 residues within 4Å: Chain A: Q.151, A.152, Y.282, F.329, P.389, D.390, Y.393 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.152, A:Y.282, A:D.390 Water bridges: A:Y.282 IMD.9: 5 residues within 4Å: Chain A: W.326, F.329, V.382, A.392, P.397 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.327, A:L.380, A:L.380 IMD.10: 8 residues within 4Å: Chain A: G.359, G.362, E.363, N.366, E.516, A.519, Q.520, Q.523 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.363, A:N.366, A:E.516

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wittmann, S.K. et al., Thermodynamic properties of leukotriene A4hydrolase inhibitors. Bioorg.Med.Chem. (2016)

Release Date

2016-10-05

Peptides

HUMAN LEUKOTRIENE A4 HYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HUMAN LEUKOTRIENE A4 HYDROLASE