SMTL ID : 5fws.1

Wnt modulator Kremen crystal form I at 1.90A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.135, H.137, R.214 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.135, A:H.137, A:R.214 SO4.6: 3 residues within 4Å: Chain B: K.135, H.137, R.214 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:K.135, B:H.137, B:R.214

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.56, W.57, N.93, Y.94 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.57 Hydrogen bonds: A:N.93, A:Y.94, A:Y.94 NAG.3: 4 residues within 4Å: Chain A: F.68, N.70, E.71, E.91 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.71 Hydrogen bonds: A:N.70, A:E.71, A:E.71 NAG.4: 3 residues within 4Å: Chain A: H.262, N.304, V.332 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.304 NAG.7: 4 residues within 4Å: Chain B: N.56, W.57, N.93, Y.94 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.57 Hydrogen bonds: B:N.93, B:Y.94 NAG.8: 4 residues within 4Å: Chain B: F.68, N.70, E.71, E.91 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:E.71 Hydrogen bonds: B:N.70, B:E.71 NAG.9: 3 residues within 4Å: Chain B: H.262, N.304, V.332 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.304

2 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: Y.245, D.274, D.277, D.317, N.320 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.274, A:D.277, A:D.277, A:D.317, A:N.320 CA.10: 5 residues within 4Å: Chain B: Y.245, D.274, D.277, D.317, N.320 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.274, B:D.277, B:D.277, B:D.317, B:N.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zebisch, M. et al., Structure of the Dual-Mode Wnt Regulator Kremen1 and Insight Into Ternary Complex Formation with Lrp6 and Dickkopf. Structure (2016)

Release Date

2016-07-20

Peptides

KREMEN PROTEIN 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

KREMEN PROTEIN 1

Related Entries With Identical Sequence