SMTL ID : 5fwv.1

Wnt modulator Kremen crystal form III at 3.2A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: H.137, R.214 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: K.148, F.161 Chain B: K.148, F.161 Ligands: CL.9 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: P.76, Y.107, Y.116 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: Y.252, H.287 Ligand excluded by PLIP CL.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: H.137, R.214 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: K.148, F.161 Chain B: K.148, F.161 Ligands: CL.2 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: P.76, Y.107, Y.116 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: Y.252, H.287 Ligand excluded by PLIP CL.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: N.56, W.57, N.93, Y.94 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.57 Hydrogen bonds: A:N.93 NAG.6: 4 residues within 4Å: Chain A: F.68, N.70, E.71, E.91 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.70, A:E.71, A:E.71, A:E.71 NAG.12: 4 residues within 4Å: Chain B: N.56, W.57, N.93, Y.94 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:W.57 Hydrogen bonds: B:N.93, B:Y.94 NAG.13: 4 residues within 4Å: Chain B: F.68, N.70, E.71, E.91 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.70, B:E.71, B:E.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zebisch, M. et al., Structure of the Dual-Mode Wnt Regulator Kremen1 and Insight Into Ternary Complex Formation with Lrp6 and Dickkopf. Structure (2016)

Release Date

2016-07-20

Peptides

KREMEN PROTEIN 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

KREMEN PROTEIN 1

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