SMTL ID : 5fx5.1

Novel inhibitors of human rhinovirus 3C protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: L.64, Y.65, L.72, S.179, Y.180 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.65, A:S.179 Water bridges: A:Y.65 GOL.2: 2 residues within 4Å: Chain A: K.71, N.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.71

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 3 residues within 4Å: Chain A: S.123, Y.124, G.125 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.123, A:S.123

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 7 residues within 4Å: Chain A: Y.33, F.36, Y.62, L.64, V.76, Y.180, F.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.33, A:F.181

1 x HOV: ethyl (4R)-4-[[(2S,3R)-1-[(2S)-3-methyl-2-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]butanoyl]-3-phenyl-pyrrolidin-2-yl]carbonylamino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate(Covalent)

HOV.5: 21 residues within 4Å: Chain A: N.24, G.25, K.26, F.27, H.42, E.73, L.128, L.129, S.130, T.144, K.145, S.146, G.147, Y.148, C.149, H.163, V.164, G.165, G.166, N.167, F.172 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.27, A:H.42, A:E.73, A:L.129, A:L.129, A:L.129, A:F.172 Hydrogen bonds: A:S.130, A:T.144, A:T.144, A:G.147, A:C.149, A:V.164, A:G.166, A:G.166, A:N.167 Water bridges: A:G.131, A:N.167, A:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawatkar, S.P. et al., Design and Structure-Activity Relationships of Novel Inhibitors of Human Rhinovirus 3C Protease. Bioorg.Med.Chem.Lett. (2016)

Release Date

2016-06-22

Peptides

RHINOVIRUS 3C PROTEASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RHINOVIRUS 3C PROTEASE

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