- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.17: 8 residues within 4Å:- Chain A: W.195, Y.197, E.210, S.216, A.308, V.309, N.310
- Ligands: EDO.16
2 PLIP interactions:2 interactions with chain A- Water bridges: A:N.218
- Salt bridges: A:E.210
DMS.18: 8 residues within 4Å:- Chain A: E.340, C.343, K.344, S.347, E.392, F.409, R.444, Y.445
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.445
- Water bridges: A:E.340
- Salt bridges: A:E.392
DMS.19: 7 residues within 4Å:- Chain A: I.209, W.213, E.240, H.326, Y.327, L.330, R.332
2 PLIP interactions:2 interactions with chain A- Water bridges: A:E.240, A:Y.327
- 1 x BY4: (3R)-3-azanyl-4-methyl-1,3-dihydroindol-2-one(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nowak, R. et al., Crystal Structure of the Catalytic Domain of Human Jarid1B in Complex with N10042A. To be Published
- Release Date
- 2016-03-23
- Peptides
- LYSINE-SPECIFIC DEMETHYLASE 5B: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.06 Å
- Oligo State
- monomer
- Ligands
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 1 x BY4: (3R)-3-azanyl-4-methyl-1,3-dihydroindol-2-one(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nowak, R. et al., Crystal Structure of the Catalytic Domain of Human Jarid1B in Complex with N10042A. To be Published
- Release Date
- 2016-03-23
- Peptides
- LYSINE-SPECIFIC DEMETHYLASE 5B: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A