SMTL ID : 5fzp.1

Structure of the dispase autolysis inducing protein from Streptomyces mobaraensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: D.226, N.228, T.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.228, A:T.255 GOL.2: 4 residues within 4Å: Chain A: R.263, I.264, D.266 Chain B: Q.298 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.298 Water bridges: A:D.266 GOL.3: 7 residues within 4Å: Chain A: T.13, F.23, T.24, T.25, D.26, T.30, A.32 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.13, A:T.24, A:T.24, A:T.25, A:T.25, A:T.30 Water bridges: A:T.25 GOL.4: 5 residues within 4Å: Chain A: D.18, H.60, N.61, D.62, E.63 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.18, A:N.61, A:D.62 Water bridges: A:V.41, A:S.42, A:S.42, A:H.60 GOL.7: 6 residues within 4Å: Chain A: F.297, Q.298 Chain B: R.263, I.264, V.265, D.266 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.263, B:I.264, A:Q.298 GOL.8: 7 residues within 4Å: Chain B: T.13, F.23, T.24, T.25, D.26, T.30, A.32 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.13, B:T.24, B:T.25, B:T.25, B:D.26 GOL.9: 7 residues within 4Å: Chain A: P.269, D.270, K.316 Chain B: P.269, D.270, Y.300, K.316 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:K.316, A:K.316, B:D.270, B:D.270, B:Y.300, B:K.316 Water bridges: B:Y.300, B:Y.300

4 x CA: CALCIUM ION(Non-covalent)

CA.5: 4 residues within 4Å: Chain A: D.267, E.272, L.273 Ligands: CA.11 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.267, A:L.273, H2O.12, H2O.12, H2O.13 CA.6: 2 residues within 4Å: Chain A: D.322, E.343 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.322, A:E.343, A:E.343, H2O.15, H2O.16 CA.10: 2 residues within 4Å: Chain B: D.322, E.343 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.322, B:D.322, H2O.28, H2O.29, H2O.29 CA.11: 4 residues within 4Å: Chain B: D.267, E.272, L.273 Ligands: CA.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.267, B:D.267, B:E.272, B:L.273, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiebig, D. et al., Structure of the Dispase Autolysis Inducing Protein from Streptomyces Mobaraensis and Glutamine Cross-Linking Sites for Transglutaminase. J.Biol.Chem. (2016)

Release Date

2016-08-10

Peptides

DISPASE AUTOLYSIS-INDUCING PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DISPASE AUTOLYSIS-INDUCING PROTEIN