- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 5 residues within 4Å:- Chain A: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.178, A:D.178, A:H.182, A:S.201, A:L.202
K.3: 5 residues within 4Å:- Chain A: Y.191, R.194, V.197, S.199, F.226
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:Y.191, A:R.194, A:V.197, A:F.226, H2O.6
K.9: 5 residues within 4Å:- Chain B: Y.191, R.194, V.197, S.199, F.226
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:Y.191, B:R.194, B:V.197, B:F.226, H2O.17
K.10: 5 residues within 4Å:- Chain B: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.178, B:D.178, B:H.182, B:S.201, B:L.202
K.15: 5 residues within 4Å:- Chain C: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.178, C:D.178, C:H.182, C:S.201, C:L.202
K.16: 5 residues within 4Å:- Chain C: Y.191, R.194, V.197, S.199, F.226
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:Y.191, C:R.194, C:V.197, C:F.226, H2O.27
K.22: 5 residues within 4Å:- Chain D: Y.191, R.194, V.197, S.199, F.226
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:Y.191, D:R.194, D:V.197, D:F.226, H2O.37
K.23: 5 residues within 4Å:- Chain D: D.178, D.180, H.182, S.201, L.202
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.178, D:D.178, D:H.182, D:S.201, D:L.202
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 11 residues within 4Å:- Chain A: P.140, H.142, H.143, G.151, C.153, D.180, H.182, D.268, G.310, Y.312
- Ligands: ZN.1
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:P.140
- Hydrogen bonds: A:Y.312
- Salt bridges: A:H.142, A:H.143, A:H.182
ACT.11: 10 residues within 4Å:- Chain B: P.140, H.142, H.143, G.151, D.180, H.182, D.268, G.310, Y.312
- Ligands: ZN.8
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:P.140
- Salt bridges: B:H.142, B:H.143, B:H.182
ACT.17: 11 residues within 4Å:- Chain C: P.140, H.142, H.143, G.151, C.153, D.180, H.182, D.268, G.310, Y.312
- Ligands: ZN.14
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:P.140
- Hydrogen bonds: C:Y.312
- Salt bridges: C:H.142, C:H.143, C:H.182
ACT.24: 10 residues within 4Å:- Chain D: P.140, H.142, H.143, G.151, D.180, H.182, D.268, G.310, Y.312
- Ligands: ZN.21
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:P.140
- Hydrogen bonds: D:Y.312
- Salt bridges: D:H.142, D:H.143, D:H.182
- 10 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.5: 5 residues within 4Å:- Chain A: Q.188, A.189, Y.192, E.216, D.217
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:Q.188, A:E.216, A:E.216
- Water bridges: A:A.189, A:A.189, A:D.217, A:D.217
- Salt bridges: A:D.217, A:D.217
EPE.6: 2 residues within 4Å:- Chain A: G.28, W.29
No protein-ligand interaction detected (PLIP)EPE.7: 8 residues within 4Å:- Chain A: T.23, L.24, P.25, Q.99, D.100
- Chain B: P.338, L.339, F.342
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:D.100, A:D.100
EPE.12: 5 residues within 4Å:- Chain B: Q.188, A.189, Y.192, D.217, E.220
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.188
- Water bridges: B:A.189, B:A.189
- Salt bridges: B:D.217, B:D.217
EPE.13: 8 residues within 4Å:- Chain A: P.338, L.339, F.342
- Chain B: T.23, L.24, P.25, Q.99, D.100
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.23
- Water bridges: B:D.100
- Salt bridges: B:D.100, B:D.100
EPE.18: 5 residues within 4Å:- Chain C: Q.188, A.189, Y.192, E.216, D.217
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:Q.188, C:E.216
- Water bridges: C:A.189, C:A.189
- Salt bridges: C:D.217, C:D.217
EPE.19: 2 residues within 4Å:- Chain C: G.28, W.29
No protein-ligand interaction detected (PLIP)EPE.20: 8 residues within 4Å:- Chain C: T.23, L.24, P.25, Q.99, D.100
- Chain D: P.338, L.339, F.342
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.23
- Salt bridges: C:D.100, C:D.100
EPE.25: 5 residues within 4Å:- Chain D: Q.188, A.189, Y.192, D.217, E.220
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:Q.188
- Water bridges: D:A.189, D:A.189, D:D.217
- Salt bridges: D:D.217, D:D.217
EPE.26: 8 residues within 4Å:- Chain C: P.338, L.339, F.342
- Chain D: T.23, L.24, P.25, Q.99, D.100
3 PLIP interactions:3 interactions with chain D- Water bridges: D:D.100
- Salt bridges: D:D.100, D:D.100
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kramer, A. et al., Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa. Biochemistry (2016)
- Release Date
- 2016-11-30
- Peptides
- HDAH: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 10 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kramer, A. et al., Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa. Biochemistry (2016)
- Release Date
- 2016-11-30
- Peptides
- HDAH: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
AD
C