SMTL ID : 5g13.1

Pseudomonas aeruginosa HDAH (H143A) unliganded.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.180, H.182, D.268 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.180, A:H.182, A:D.268, H2O.5, H2O.6 ZN.4: 3 residues within 4Å: Chain B: D.180, H.182, D.268 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.180, B:H.182, B:D.268, H2O.13, H2O.14 ZN.7: 3 residues within 4Å: Chain C: D.180, H.182, D.268 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.180, C:H.182, C:D.268, H2O.22, H2O.23 ZN.10: 3 residues within 4Å: Chain D: D.180, H.182, D.268 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.180, D:H.182, D:D.268, H2O.31, H2O.32

8 x K: POTASSIUM ION(Non-covalent)

K.2: 5 residues within 4Å: Chain A: D.178, D.180, H.182, S.201, L.202 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.178, A:D.178, A:H.182, A:S.201, A:L.202 K.3: 5 residues within 4Å: Chain A: Y.191, R.194, V.197, S.199, F.226 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.191, A:R.194, A:V.197, A:F.226, H2O.6 K.5: 5 residues within 4Å: Chain B: Y.191, R.194, V.197, S.199, F.226 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:Y.191, B:R.194, B:V.197, B:F.226, H2O.14 K.6: 5 residues within 4Å: Chain B: D.178, D.180, H.182, S.201, L.202 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.178, B:D.178, B:H.182, B:S.201, B:L.202 K.8: 5 residues within 4Å: Chain C: D.178, D.180, H.182, S.201, L.202 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.178, C:D.178, C:H.182, C:S.201, C:L.202 K.9: 5 residues within 4Å: Chain C: Y.191, R.194, V.197, S.199, F.226 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:Y.191, C:R.194, C:V.197, C:F.226, H2O.23 K.11: 5 residues within 4Å: Chain D: Y.191, R.194, V.197, S.199, F.226 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:Y.191, D:R.194, D:V.197, D:F.226, H2O.32 K.12: 5 residues within 4Å: Chain D: D.178, D.180, H.182, S.201, L.202 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.178, D:D.178, D:H.182, D:S.201, D:L.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kramer, A. et al., Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa. Biochemistry (2016)

Release Date

2016-12-07

Peptides

HDAH: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

HDAH