SMTL ID : 5g1d.1

The complex structure of syntenin-1 PDZ domain with c-terminal extension

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-dimer

Ligands

2 x ALA- PRO- THR- ASN- GLU- PHE- TYR- ALA: SYNDECAN-4(Non-covalent)

ALA-PRO-THR-ASN-GLU-PHE-TYR-ALA.1: 12 residues within 4Å: Chain B: H.111, V.112, G.113, F.114, I.115, F.116, K.117, T.122, D.154, A.155, A.158, L.161 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.115, B:F.116, B:K.117, B:D.154, B:A.158, B:L.161 Hydrogen bonds: B:V.112, B:G.113, B:F.114, B:F.116, B:F.116 ALA-PRO-THR-ASN-GLU-PHE-TYR-ALA.2: 10 residues within 4Å: Chain A: H.111, V.112, G.113, F.114, I.115, F.116, K.117, T.122, D.154, A.158 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.115, A:I.115, A:F.116, A:K.117, A:D.154, A:A.158 Hydrogen bonds: A:V.112, A:G.113, A:F.114, A:F.116, A:F.116 pi-Stacking: A:H.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, Y. et al., New Structural Insight of C-Terminal Region of Syntenin-1, Enhancing the Molecular Dimerization and Inhibitory Function Related on Syndecan-4 Signaling. Sci.Rep. (2016)

Release Date

2016-11-23

Peptides

SYNTENIN-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SYNTENIN-1

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