SMTL ID : 5g2v.1

Structure of BT4656 in complex with its substrate D-Glucosamine-2-N, 6-O-disulfate.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.37, D.38, S.77, D.349, Q.350 Ligands: SGN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.37, A:D.38, A:D.349, A:D.349

1 x SGN: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose(Non-covalent)

SGN.2: 19 residues within 4Å: Chain A: D.37, D.38, L.76, S.77, N.98, K.125, H.127, Q.147, H.199, R.200, W.249, R.266, Q.350, D.361, K.362, R.363, E.446, H.447 Ligands: CA.1 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:D.38, A:S.77, A:S.77, A:N.98, A:Q.147, A:Q.147, A:R.200, A:D.361, A:K.362, A:R.363, A:E.446, A:E.446, A:E.446, A:E.446 Water bridges: A:Q.144, A:H.199, A:R.266, A:R.266, A:R.266, A:E.446 Salt bridges: A:K.125, A:H.127, A:H.199, A:H.199, A:R.200, A:R.266, A:K.362

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 6 residues within 4Å: Chain A: L.333, E.334, G.337, E.338, L.339, D.340 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.339, A:D.340 Water bridges: A:N.341

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cartmell, A. et al., How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-05-24

Peptides

N-ACETYLGLUCOSAMINE-6-SULFATASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-ACETYLGLUCOSAMINE-6-SULFATASE