SMTL ID : 5g3n.1 (1 other biounit)

Discovery of a novel secreted phospholipase A2 (sPLA2) inhibitor.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: H.27, G.29, G.31, D.48 Ligands: X28.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.27, A:G.29, A:G.31, A:D.48, A:D.48 CA.2: 5 residues within 4Å: Chain A: F.23, Y.24, G.25, Y.112, N.114 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:F.23, A:G.25, A:Y.112, H2O.2

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: H.6, R.7, K.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.6

1 x X28: 3-(5'-BENZYL-2'-CARBAMOYLBIPHENYL-3-YL)PROPANOIC ACID(Non-covalent)

X28.4: 20 residues within 4Å: Chain A: L.2, F.5, H.6, I.9, A.17, A.18, Y.21, G.22, H.27, C.28, G.29, V.30, G.31, C.44, H.47, D.48, Y.51, K.62, F.98 Ligands: CA.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.2, A:F.5, A:F.5, A:H.6, A:I.9, A:A.17, A:V.30, A:Y.51, A:K.62, A:F.98 Hydrogen bonds: A:G.29, A:G.31, A:H.47, A:D.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giordanetto, F. et al., Discovery of Azd2716: A Novel Secreted Phospholipase A2 (Spla2) Inhibitor for the Treatment of Coronary Artery Disease. Acs Med.Chem.Lett. (2016)

Release Date

2016-09-14

Peptides

PHOSPHOLIPASE A2, MEMBRANE ASSOCIATED: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHOLIPASE A2, MEMBRANE ASSOCIATED

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