SMTL ID : 5g3r.1 (1 other biounit)

Crystal structure of NagZ from Pseudomonas aeruginosa in complex with N-acetylglucosamine and L-Ala-1,6-anhydroMurNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 10 residues within 4Å: Chain A: I.51, F.53, D.82, F.134, R.151, K.181, H.182, H.186, M.226 Ligands: 89A.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.151, A:R.151, A:K.181, A:H.182 Water bridges: A:D.265

1 x 89A: 2-[[(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-oxidanyl-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoyl]amino]propanamide(Non-covalent)

89A.2: 9 residues within 4Å: Chain A: F.53, R.87, V.88, R.90, V.147, R.151, D.265, N.296 Ligands: NAG.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.53, A:V.88, A:V.88 Hydrogen bonds: A:R.87, A:R.87, A:R.90, A:R.90, A:N.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Acebron, I. et al., Catalytic Cycle of the N-Acetylglucosaminidase NagZ from Pseudomonas aeruginosa. J. Am. Chem. Soc. (2017)

Release Date

2017-05-17

Peptides

?: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

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