- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 7 residues within 4Å:- Chain A: D.183, D.185, H.187, G.189, S.206, L.207, H.208
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.185, A:H.187, A:S.206, A:L.207
K.3: 5 residues within 4Å:- Chain A: W.196, D.199, V.202, T.204, Y.231
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.199, A:V.202, A:Y.231, H2O.14, H2O.14
K.9: 6 residues within 4Å:- Chain B: D.183, D.185, H.187, S.206, L.207, H.208
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.183, B:D.185, B:H.187, B:S.206, B:L.207
K.10: 5 residues within 4Å:- Chain B: W.196, D.199, V.202, T.204, Y.231
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.199, B:V.202, B:Y.231, H2O.30, H2O.31
K.17: 6 residues within 4Å:- Chain C: D.183, D.185, H.187, S.206, L.207, H.208
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.183, C:D.185, C:H.187, C:S.206, C:L.207
K.18: 5 residues within 4Å:- Chain C: W.196, D.199, V.202, T.204, Y.231
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.199, C:V.202, C:Y.231, H2O.48, H2O.48
K.24: 5 residues within 4Å:- Chain D: W.196, D.199, V.202, T.204, Y.231
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.199, D:V.202, D:Y.231, H2O.63, H2O.64
K.25: 6 residues within 4Å:- Chain D: D.183, D.185, H.187, G.189, S.206, L.207
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.183, D:D.185, D:H.187, D:S.206, D:L.207
- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.4: 3 residues within 4Å:- Chain A: L.355, L.356, D.357
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.357
- Water bridges: A:A.358, A:R.360
PEG.5: 4 residues within 4Å:- Chain A: L.174, G.175, M.176, Q.264
No protein-ligand interaction detected (PLIP)PEG.6: 3 residues within 4Å:- Chain A: E.177, R.178, P.200
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.177, A:E.177, A:R.178
PEG.11: 5 residues within 4Å:- Chain B: E.177, R.178, P.200, N.227, Y.231
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.177
- Water bridges: B:Y.231
PEG.13: 4 residues within 4Å:- Chain B: T.101, G.102, N.152, A.153
3 PLIP interactions:3 interactions with chain B- Water bridges: B:N.88, B:N.152, B:N.152
PEG.14: 6 residues within 4Å:- Chain B: R.91, V.92, L.95, D.100, T.101, G.102
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.91, B:R.91, B:D.100
PEG.20: 5 residues within 4Å:- Chain C: Q.193, W.197, D.216, S.217, E.222
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.193, C:D.216
PEG.22: 4 residues within 4Å:- Chain C: D.194, W.197, N.198, A.225
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.194, C:N.198
- Water bridges: C:W.197
PEG.27: 3 residues within 4Å:- Chain D: R.178, P.200, Y.231
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.178
- Water bridges: D:N.227
PEG.28: 4 residues within 4Å:- Chain D: Q.193, W.197, D.216, E.222
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.193, D:D.216
PEG.29: 5 residues within 4Å:- Chain D: K.90, S.93, N.94, G.111, L.113
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:S.93, D:N.94, D:G.111
- Water bridges: D:E.114
- 4 x C65: (2E)-N-hydroxy-3-{4-[(E)-phenyldiazenyl]phenyl}prop-2-enamide(Non-covalent)
C65.7: 16 residues within 4Å:- Chain A: L.26, I.105, H.147, H.148, G.156, F.157, D.185, H.187, F.213, D.273, G.315, Y.317
- Chain B: P.342, Y.343, F.346
- Ligands: ZN.1
15 PLIP interactions:5 interactions with chain B, 10 interactions with chain A- Hydrophobic interactions: B:Y.343, B:F.346, B:F.346, B:F.346, B:F.346, A:L.26, A:L.26, A:I.105, A:I.105, A:F.157, A:F.157, A:F.157, A:F.213
- pi-Stacking: A:H.187, A:F.213
C65.15: 14 residues within 4Å:- Chain A: F.346
- Chain B: L.26, I.105, H.147, H.148, F.157, D.185, H.187, F.213, D.273, L.280, G.315, Y.317
- Ligands: ZN.8
14 PLIP interactions:10 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:L.26, B:L.26, B:I.105, B:I.105, B:F.157, B:F.157, B:F.213, B:F.213, B:L.280, B:Y.317, A:F.346, A:F.346, A:F.346, A:F.346
C65.19: 13 residues within 4Å:- Chain C: L.26, I.105, H.147, H.148, G.156, D.185, H.187, F.213, D.273, G.315, Y.317
- Chain D: F.346
- Ligands: ZN.16
9 PLIP interactions:7 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:L.26, C:L.26, C:I.105, C:F.213, C:F.213, D:F.346, D:F.346
- Hydrogen bonds: C:Y.317
- pi-Stacking: C:F.157
C65.26: 15 residues within 4Å:- Chain C: Y.343, F.346
- Chain D: L.26, I.105, H.147, H.148, F.157, D.185, H.187, F.213, D.273, L.280, G.315, Y.317
- Ligands: ZN.23
16 PLIP interactions:11 interactions with chain D, 5 interactions with chain C- Hydrophobic interactions: D:L.26, D:L.26, D:I.105, D:I.105, D:F.157, D:F.157, D:F.213, D:F.213, D:L.280, D:Y.317, C:Y.343, C:F.346, C:F.346, C:F.346, C:F.346
- Hydrogen bonds: D:Y.317
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weston, C.E. et al., Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors. ACS Infect Dis (2017)
- Release Date
- 2016-11-23
- Peptides
- HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 4 x C65: (2E)-N-hydroxy-3-{4-[(E)-phenyldiazenyl]phenyl}prop-2-enamide(Non-covalent)
- 2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weston, C.E. et al., Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors. ACS Infect Dis (2017)
- Release Date
- 2016-11-23
- Peptides
- HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D