SMTL ID : 5g47.1

Structure of Gc glycoprotein from severe fever with thrombocytopenia syndrome virus in the trimeric postfusion conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: E.42, K.59, K.61, N.376, L.393 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.61 NAG.2: 4 residues within 4Å: Chain B: E.42, K.61, N.376, L.393 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.61 NAG.4: 4 residues within 4Å: Chain C: E.42, K.59, N.376, L.393 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.61

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: S.212, G.213 Chain B: S.212, G.213 Chain C: S.212, G.213 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halldorsson, S. et al., Structure of a Phleboviral Envelope Glycoprotein Reveals a Consolidated Model of Membrane Fusion. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-07-06

Peptides

SFTSV GC: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

SFTSV GC