SMTL ID : 5g4c.1 (1 other biounit)

Human SIRT2 catalyse short chain fatty acyl lysine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ARG- ALA- ALA- 6G4- THR: SIRT2(Non-covalent)

ARG-ALA-ALA-6G4-THR.1: 18 residues within 4Å: Chain A: F.63, F.86, L.105, I.136, H.154, I.199, V.200, F.201, F.202, G.203, E.204, S.205, L.206, Q.232, V.233, Q.234, P.235 Ligands: CNA.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.86, A:L.105, A:I.136, A:I.199, A:F.202, A:F.202, A:L.206, A:V.233, A:Q.234 Hydrogen bonds: A:V.200, A:G.203, A:L.206, A:Q.232, A:Q.234, A:Q.234

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.162, C.167, C.188, C.191 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.162, A:C.167, A:C.188, A:C.191

1 x CNA: CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

CNA.3: 28 residues within 4Å: Chain A: G.51, A.52, G.53, S.55, T.56, I.60, P.61, D.62, F.63, R.64, S.65, Q.134, N.135, I.136, D.137, H.154, G.228, T.229, S.230, L.231, V.233, N.253, K.254, E.255, G.289, E.290, C.291 Ligands: ARG-ALA-ALA-6G4-THR.1 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:A.52, A:I.60, A:F.63 Hydrogen bonds: A:A.52, A:G.53, A:S.55, A:T.56, A:T.56, A:F.63, A:R.64, A:Q.134, A:I.136, A:D.137, A:D.137, A:T.229, A:S.230, A:S.230, A:S.230, A:L.231, A:N.253, A:K.254, A:E.255, A:C.291 Water bridges: A:T.56, A:D.292 Salt bridges: A:R.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, J. et al., SIRT2 Reverses 4-Oxononanoyl Lysine Modification on Histones. J. Am. Chem. Soc. (2016)

Release Date

2017-05-03

Peptides

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2

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