SMTL ID : 5g4s.1

BROMODOMAIN OF HUMAN BRPF1 WITH N-1,3-dimethyl-6-2R-2- methylpiperazin-1-yl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl-N- ethyl-2-methoxybenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 8VI: N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide(Non-covalent)

8VI.1: 10 residues within 4Å: Chain A: N.31, I.32, E.35, V.37, P.38, E.41, V.42, Y.87, N.88, F.94 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.35, A:P.38, A:E.41, A:V.42 Hydrogen bonds: A:N.88 Water bridges: A:N.31 pi-Stacking: A:F.94, A:F.94

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: E.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bamborough, P. et al., Gsk6853, a Chemical Probe for Inhibition of the Brpf1 Bromodomain. Acs Med.Chem.Lett. (2016)

Release Date

2016-07-06

Peptides

PEREGRIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PEREGRIN