SMTL ID : 5g4x.1

The crystal structure of the SHANK3 N-terminus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

30 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: S.148, G.149, E.150, T.180, R.181, D.182, L.184 Ligand excluded by PLIP EDO.2: 7 residues within 4Å: Chain A: N.249, W.251, N.280, A.281, S.282, N.284, I.289 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: F.56, F.67, R.91, R.94, R.95 Ligand excluded by PLIP EDO.4: 2 residues within 4Å: Chain A: E.267, H.268 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: F.271, Y.272, R.347 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: Q.279, V.311, R.312 Ligands: EDO.29 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: D.17, Y.53, R.91, Y.92, R.94 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: A.132, D.136, V.168, N.171, G.172 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: Q.158, L.184, C.189, R.192, Q.193 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: F.67, L.68, K.93, H.175, D.177 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: Q.252, N.275, A.278 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: G.244, T.245, T.246 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: L.125, H.126, S.127 Ligand excluded by PLIP EDO.14: 2 residues within 4Å: Chain A: D.147, S.148 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: R.215, L.225, D.247, Q.256 Ligands: EDO.20 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain A: N.294, G.327, N.328, F.329, E.330 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain A: L.231, E.234, L.235, H.238 Ligand excluded by PLIP EDO.18: 3 residues within 4Å: Chain A: N.44, H.45, S.46 Ligand excluded by PLIP EDO.19: 6 residues within 4Å: Chain A: G.228, G.261, H.262, V.263, Q.264, H.265 Ligand excluded by PLIP EDO.20: 6 residues within 4Å: Chain A: D.247, N.249, W.251, Q.256, R.259 Ligands: EDO.15 Ligand excluded by PLIP EDO.21: 5 residues within 4Å: Chain A: K.117, M.120, D.121, Q.124, D.145 Ligand excluded by PLIP EDO.22: 4 residues within 4Å: Chain A: Y.92, R.94, N.142, F.143 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain A: R.95, V.96, N.171, G.173 Ligand excluded by PLIP EDO.24: 4 residues within 4Å: Chain A: N.313, N.315, Q.317, I.325 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain A: K.167, D.204, L.205 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain A: W.33, D.210, K.212 Ligands: EDO.30 Ligand excluded by PLIP EDO.27: 3 residues within 4Å: Chain A: L.47, Q.48, D.49 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain A: K.309, D.310, T.318, F.320, K.336 Ligand excluded by PLIP EDO.29: 4 residues within 4Å: Chain A: N.308, D.310, V.311 Ligands: EDO.6 Ligand excluded by PLIP EDO.30: 6 residues within 4Å: Chain A: W.33, K.36, Q.37, E.70, R.179 Ligands: EDO.26 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lilja, J. et al., SHANK proteins limit integrin activation by directly interacting with Rap1 and R-Ras. Nat. Cell Biol. (2017)

Release Date

2017-01-25

Peptides

SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 3