SMTL ID : 5g5f.1

Crystallographic structure of the Tau class glutathione S-transferase MiGSTU in complex with reduced glutathione.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 10 residues within 4Å: Chain A: S.14, P.15, Y.16, K.41, K.53, K.54, I.55, P.56, E.67, S.68 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.16, A:K.54 Hydrogen bonds: A:K.54, A:I.55, A:E.67, A:S.68 Water bridges: A:L.69 Salt bridges: A:K.41, A:K.54 GSH.6: 10 residues within 4Å: Chain B: S.14, P.15, Y.16, K.41, K.53, K.54, I.55, P.56, E.67, S.68 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.16, B:K.54 Hydrogen bonds: B:K.54, B:I.55, B:E.67, B:S.68 Water bridges: B:E.67, B:L.69 Salt bridges: B:K.41, B:K.54

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: V.26, K.27, S.28, W.79, S.81, G.82, P.83 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.26, A:W.79, A:S.81, A:G.82 PEG.3: 5 residues within 4Å: Chain A: E.77, F.78, S.80 Chain B: D.89, P.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.80, A:S.80 PEG.4: 7 residues within 4Å: Chain A: S.48, P.50, P.64, C.66 Chain B: I.95, F.98, W.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.48 PEG.5: 9 residues within 4Å: Chain A: I.85, L.86, P.87, A.96, F.151, G.152, G.157, Y.158, L.159 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.152, A:Y.158, A:L.159 PEG.7: 7 residues within 4Å: Chain B: V.26, K.27, S.28, W.79, S.81, G.82, P.83 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.26, B:W.79, B:S.81, B:G.82 PEG.8: 5 residues within 4Å: Chain A: D.89, P.90 Chain B: E.77, F.78, S.80 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.89, B:S.80, B:S.80 PEG.9: 7 residues within 4Å: Chain A: I.95, F.98, W.99 Chain B: S.48, P.50, P.64, C.66 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.48 PEG.10: 9 residues within 4Å: Chain B: I.85, L.86, P.87, A.96, F.151, G.152, G.157, Y.158, L.159 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.152, B:Y.158, B:L.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valenzuela-Chavira, I. et al., Insights Into Ligand Binding to a Glutathione S-Transferase from Mango: Structure, Thermodynamics and Kinetics. Biochimie (2017)

Release Date

2017-02-01

Peptides

TAU CLASS GLUTATHIONE S-TRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

TAU CLASS GLUTATHIONE S-TRANSFERASE

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