SMTL ID : 5ghu.1

Crystal structure of YadV chaperone at 1.63 Angstrom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: R.9, K.119, I.209 Ligand excluded by PLIP

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: S.164, Y.207, A.215 No protein-ligand interaction detected (PLIP) ACT.3: 2 residues within 4Å: Chain A: V.59, R.61 No protein-ligand interaction detected (PLIP)

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 2 residues within 4Å: Chain A: Q.34, W.36 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 1 residues within 4Å: Chain A: F.212 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandey, N.K. et al., Crystal structure of the usher chaperone YadV reveals a monomer with the proline lock in closed conformation suggestive of an intermediate state. Febs Lett. (2020)

Release Date

2017-06-28

Peptides

Probable fimbrial chaperone YadV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable fimbrial chaperone YadV