SMTL ID : 5gid.1

Crystal structure of VDR in complex with DLAM-4 (C2 form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x ASN- HIS- PRO- MET- LEU- MET- ASN- LEU- LEU: SRC1(Non-covalent)

ASN-HIS-PRO-MET-LEU-MET-ASN-LEU-LEU.1: 9 residues within 4Å: Chain A: I.68, K.72, S.82, Q.85, I.86, L.89, K.90, P.242, E.246 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.85, A:I.86 Hydrogen bonds: A:K.72, A:E.246, A:E.246

1 x VDP: (3R,5S)-5-[(2R)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[(2Z)-2-[(3S,5R)-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(4-phenylbutyl)pyrrolidin-2-one(Non-covalent)

VDP.2: 20 residues within 4Å: Chain A: Y.20, L.50, L.53, L.56, V.60, S.63, I.97, R.100, S.101, S.104, W.112, C.114, V.126, T.132, L.135, H.223, Q.226, Y.227, L.230, F.248 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.50, A:L.53, A:L.56, A:V.60, A:W.112, A:V.126, A:Q.226, A:L.230 Hydrogen bonds: A:Y.20, A:R.100, A:S.104, A:S.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asano, L. et al., Regulation of the vitamin D receptor by vitamin D lactam derivatives. Febs Lett. (2016)

Release Date

2016-12-07

Peptides

Vitamin D3 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 receptor