SMTL ID : 5gie.2 (1 other biounit)

Crystal structure of VDR in complex with DLAM-4P (P21 form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VDP: (3R,5S)-5-[(2R)-2-[(1R,3aS,4E,7aR)-7a-methyl-4-[(2Z)-2-[(3S,5R)-2-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3a,5,6,7-hexahydro-1H-inden-1-yl]propyl]-3-methyl-3-oxidanyl-1-(4-phenylbutyl)pyrrolidin-2-one(Non-covalent)

VDP.1: 17 residues within 4Å: Chain A: Y.27, L.60, V.67, S.70, I.104, R.107, S.108, S.111, W.119, C.121, V.133, T.139, L.142, H.230, Y.234, L.237, F.255 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.60, A:I.104, A:W.119, A:V.133, A:V.133, A:T.139, A:L.142, A:L.237 Hydrogen bonds: A:Y.27, A:S.70, A:R.107, A:R.107, A:S.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asano, L. et al., Regulation of the vitamin D receptor by vitamin D lactam derivatives. Febs Lett. (2016)

Release Date

2016-12-07

Peptides

Vitamin D3 receptor: A
SRC1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Vitamin D3 receptor

SRC1

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