SMTL ID : 5giu.1

Crystal structure of Xaa-Pro peptidase from Deinococcus radiodurans, metal-free active site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 10 residues within 4Å: Chain A: F.179, D.210, D.221, T.223, H.285, H.292, E.314, R.326, E.328 Ligands: NA.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.210, A:T.223, A:E.314, A:E.328 Water bridges: A:E.314, A:E.314 Salt bridges: A:H.285, A:H.292, A:R.326 PO4.3: 10 residues within 4Å: Chain B: F.179, D.210, D.221, T.223, H.285, H.292, E.314, R.326, E.328 Ligands: NA.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.210, B:E.314, B:E.328 Water bridges: B:T.312, B:E.328 Salt bridges: B:H.285, B:H.292, B:R.326

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: D.210, D.221, M.222, T.223, E.328 Ligands: PO4.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.221 NA.4: 6 residues within 4Å: Chain B: D.210, D.221, M.222, T.223, E.328 Ligands: PO4.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.223, B:T.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Are, V.N. et al., Xaa-Pro peptidase from Deinococcus radiodurans, metal-free active site. To Be Published

Release Date

2017-06-28

Peptides

Proline dipeptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Proline dipeptidase